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title
Musings on Quantitative Palaeoecology
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Once you have finished counting diatoms, the real fun begins
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Musings on Quantitative Palaeoecology
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2026-02-14 17:52:14
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Musings on Quantitative Palaeoecology | Once you have finished counting diatoms, the real fun begins Musings on Quantitative Palaeoecology Once you have finished counting diatoms, the real fun begins Skip to content Home About ← Older posts Resampling Assemblage Counts Posted on 13/09/2021 by richard telford Imagine that one diatom assemblage has 20 species and another has 25, but the more species rich assemblage also has more diatoms counted. A fair comparison of the richness of each assemblage can only be made when the number of individuals is constant. In this case, we can use the function rarefy from the vegan package. Other analyses might not be possible to run directly, so you need re-sampled counts with a specified count sum. I’ve been doing this recently to find the how the prevalence of singletons (species only occurring once) varies with count sum. There are several ways to resample counts. A key question is whether you want to sample with or ...
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