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scverse
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Foundational tools for single-cell omics data analysis
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2025-12-28 07:46:48
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scverse Packages Core Ecosystem Learn People Blog Events About About scverse Mission statement Roles Code of Conduct Join scverse Foundational tools for single-cell omics data analysis GitHub Discourse Zulip Twitter YouTube Core packages anndata Standard for annotated matrices mudata Multimodal data format scanpy Single-cell analysis framework muon Multi-omics analysis framework scvi-tools Single-cell machine learning framework scirpy Single-cell immune sequencing analysis framework squidpy Spatial single cell analysis View all scverse packages Ecosystem A broader ecosystem of packages builds on the scverse core packages. These tools implement models and analytical approaches to tackle challenges in spatial omics, regulatory genomics, trajectory inference, visualization, and more. Continue to scverse ecosystem Mission scverse is a consortium of foundational tools (mostly in Python) for omics data in life sc...
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