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title
single-cell
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single-cell
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2026-01-22 08:46:57
raw text
single-cell single-cell WormBase has developed two tools for exploring published C. elegans single cell RNA sequencing (scRNAseq) data: scdefg for interactive differential expression on integrated datasets and wormcells-viz for visualization of gene expression . These tools have been deployed at WormBase with public C. elegans datasets and will continue to be updated as new datasets are published. Source code is available at github.com/WormBase/scdefg and github.com/WormBase/wormcells-viz , together with instructions on how to deploy these tools with any scRNAseq dataset. For a detailed overview, see the Single cell tools for WormBase preprint (July 2021). For additional discussion see this 45 min talk from May 2021: [ talk , slides ]. Integrated Differential Expression: scdefg.textpressolab.com Three datasets (CeNGEN, Packer 2019, Ben-David 2021) have been integrated and can be compared with differential expression. More information about each dataset is...
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10 - scdefg.textpressolab.com, cengen.textpressolab.com, packer2019.textpressolab.com, bendavid2021.textpressolab.com, docs.scvi-tools.org, genomebiology.biomedcentral.com, cran.r-project.org, cengen.shinyapps.io, science.sciencemag.org, cello.shinyapps.io
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